This dataset, cystic_fibrosis_snps_df, is a data frame containing genetic association data for cystic fibrosis, including a case-control indicator and 23 single nucleotide polymorphisms (SNPs) with specified inter-marker distances. The dataset contains 186 observations across 24 variables.
Usage
data(cystic_fibrosis_snps_df)Format
A data frame with 186 observations and 24 variables:
- y
Integer case-control indicator
- loc1
Integer SNP genotype at location 1
- loc2
Integer SNP genotype at location 2
- loc3
Integer SNP genotype at location 3
- loc4
Integer SNP genotype at location 4
- loc5
Integer SNP genotype at location 5
- loc6
Integer SNP genotype at location 6
- loc7
Integer SNP genotype at location 7
- loc8
Integer SNP genotype at location 8
- loc9
Integer SNP genotype at location 9
- loc10
Integer SNP genotype at location 10
- loc11
Integer SNP genotype at location 11
- loc12
Integer SNP genotype at location 12
- loc13
Integer SNP genotype at location 13
- loc14
Integer SNP genotype at location 14
- loc15
Integer SNP genotype at location 15
- loc16
Integer SNP genotype at location 16
- loc17
Integer SNP genotype at location 17
- loc18
Integer SNP genotype at location 18
- loc19
Integer SNP genotype at location 19
- loc20
Integer SNP genotype at location 20
- loc21
Integer SNP genotype at location 21
- loc22
Integer SNP genotype at location 22
- loc23
Integer SNP genotype at location 23
Source
Data taken from the gap.datasets package version 0.0.6. Original source: Liu JS, Sabatti C, Teng J, Keats BJB, Risch N (2001). "Bayesian Analysis of Haplotypes for Linkage Disequilibrium Mapping". Genome Research, 11:1716–1724.
Details
The dataset name has been kept as 'cystic_fibrosis_snps_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the DigestiveDataSets package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.